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Whole slide and microscopy image analysis with QuPath and OMERO

QuPath is open-source software for bioimage analysis. As a desktop application that is flexible and easy to install, QuPath is used by labs worldwide to visualise and analyse large and complex images....

👤 Léo Leplat|Alan O'Callaghan|Peter Bankhe... 📰 arXiv 📅 2026 👁 392 📚 50

SHREC: A Spectral Embedding-Based Approach for Ab-Initio Reconstruction of Helical Molecules

Cryo-electron microscopy (cryo-EM) has emerged as a powerful technique for determining the three-dimensional structures of biological molecules at near-atomic resolution. However, reconstructing helic...

👤 Guy Shapira|Yoel Shkolnisky 📰 arXiv 📅 2026 👁 381 📚 40

Single molecule localization microscopy challenge: a biologically inspired benchmark for long-sequence modeling

State space models (SSMs) have recently achieved strong performance on long sequence modeling tasks while offering improved memory and computational efficiency compared to transformer based architectu...

👤 Fatemeh Valeh|Monika Farsang|Radu Grosu|... 📰 arXiv 📅 2026 👁 488 📚 32

Pic2Spec: Generative Modeling Reconstructs Single Cell Raman Fingerprints from Brightfield Images

Single-cell molecular characterization remains a bottleneck in scalable biological analysis because of labeling requirements, limited multiplexing, and reagents that perturb physiology. Raman spectros...

👤 Srilakshmi Premachandran | Amit Kumar Bh... 📰 arXiv 📅 2026 👁 146 📚 24

Physics-Informed Neural Networks for Biological $2\mathrm{D}{+}t$ Reaction-Diffusion Systems

Physics-informed neural networks (PINNs) provide a powerful framework for learning governing equations of dynamical systems from data. Biologically-informed neural networks (BINNs) are a variant of PI...

👤 William Lavery | Jodie A. Cochrane | Chr... 📰 arXiv 📅 2026 👁 60 📚 24

Leveraging Phytolith Research using Artificial Intelligence

Phytolith analysis is a crucial tool for reconstructing past vegetation and human activities, but traditional methods are severely limited by labour-intensive, time-consuming manual microscopy. To add...

👤 Andrés G. Mejía Ramón|Kate Dudgeon|Nina ... 📰 Artificial Intelligence 📅 2026 👁 363 📚 18

Countershading coloration in blue shark skin emerges from hierarchically organized and spatially tuned photonic architectures inside skin denticles

The blue shark (Prionace glauca) exhibits a striking dorsoventral color gradient, transitioning from vibrant blue dorsally to silver and white ventrally, a pattern widely interpreted as pelagic counte...

👤 Viktoriia Kamska|Emeline Raguin|Bodo D. ... 📰 arXiv 📅 2026 👁 302 📚 18

On two differing geometric descriptions of the passage from microscopy to macroscopy in Markov diffusion theory

In various disparate settings one studies how random processes give way to parabolic partial differential equations and in turn to functional inequalities involving gradients and variational calculus....

👤 Dalton A R Sakthivadivel 📰 arXiv 📅 2026 👁 172 📚 12

Diverse and significant microbe-mediated mineral transformation in deep-sea hydrothermal vent indicated by Methylophaga, Sulfitobacter and Roseovarius.

Microbe-mineral interactions play a crucial role in microbial energy conservation and mineral mobilization within deep-sea hydrothermal vents, yet the specific microorganisms involved remain largely u...

👤 Liu Minghua, Zhong Yingwen, Ding Yi, Ma ... 📰 Current Research in Microbial Sciences 📅 2026 👁 55 📚 10

Quantifying microplastic pollution in marine organisms from a coastal lagoon: an ecological perspective using laser direct Infrared microscopy.

Fish is widely recognized as a valuable source of high-quality proteins, omega-3 fatty acids, and essential micronutrients. However, these nutritional benefits are increasingly compromised by marine p...

👤 Pérez-Álvarez María Dolores, Arroyo-Manz... 📰 未知期刊 📅 2026 👁 45 📚 9

Ascidians as a Sustainable Source of Cellulose: Physicochemical Characterization, Degradability, and Relevance for Bioplastic Applications.

Cellulose derived from ascidians (tunicates) is distinguished from plant-based counterparts by its marine origin, with high crystallinity, and complex hierarchical architecture. However, quantitative ...

👤 Zamora-Mendoza Lizbeth, Valdiviezo-Cuenc... 📰 Biopolymers 📅 2026 👁 72 📚 8

Spatio-temporal distribution patterns and risk assessment of microplastics along a coastal beach in southern Bangladesh.

This study provides a detailed, bi-seasonal analysis of microplastic (MP) distribution in Kuakata's coastal region, which is influenced by both terrestrial and marine pollution sources. The research d...

👤 Hossain Md Shawon, Karmaker Kowshik Das,... 📰 未知期刊 📅 2026 👁 43 📚 8

Antioxidant and Cytoprotective Effects of Chilean Macroalgae Against Oxidative Stress-Induced Damage in Gastric Epithelial Cells.

Background/Objectives: Oxidative stress is a key pathogenic factor in gastric diseases (GDs). Nutraceuticals with antioxidant activity derived from macroalgae represent promising preventive strategies...

👤 Acevedo-Correa Samantha, Haeger Paola A,... 📰 未知期刊 📅 2026 👁 35 📚 6

Bioinspired Antimicrobial Strategy: An Extremophile Deep Sea Peptide to Combat Cystic Fibrosis Infections Caused by Pseudomonas aeruginosa and Staphylococcus aureus.

Cystic fibrosis (CF)-associated lung infections caused by Pseudomonas aeruginosa (P. aeruginosa) and Staphylococcus aureus (S. aureus) remain difficult to treat due to multidrug resistance and the red...

👤 Boidin-Wichlacz Céline, Maresca Marc, Gr... 📰 Marine Drugs 📅 2026 👁 25 📚 5

Hierarchical YOLO-SAM: A Scalable Pipeline for Automated Segmentation and Morphometric Tracking of Coral Recruits in Time-Series Microscopy.

Coral reef ecosystems are declining rapidly due to climate change, disease, and anthropogenic stressors, driving the expansion of land-based coral propagation for reef restoration. A major bottleneck ...

👤 Zhao Richard S, Chen Cuixian, Van Horn M... 📰 Sensors 📅 2026 👁 79 📚 4

On Model-Based Clustering With Entropic Optimal Transport

We develop a new methodology for model-based clustering. Optimizing the log-likelihood provides a principled statistical framework for clustering, with solutions found via the EM algorithm. However, b...

👤 Gonzalo Mena 📰 arXiv 📅 2026 👁 67 📚 4

Anodic Dissolution Behavior and Electrochemical Turning of Ti80 Alloy in NaCl Solution.

Electrochemical turning is an efficient machining method for machining Ti80 pressure-resistant structures owing to its low tool cost and high machining flexibility. However, research has yet to explor...

👤 Wang Minglu, Li Zheng, Wang Jingtao, Li ... 📰 Langmuir 📅 2026 👁 44 📚 3

Effect of Hybrid Fiber on the Chloride Salt Erosion Resistance of Shotcrete.

The use of shotcrete is a critical support technique in ocean engineering structures. However, it often exhibits low chloride and salt erosion resistance under ocean environmental conditions and poor ...

👤 Hu Peng, Ji Hongyu, Liu Baicheng, Wang K... 📰 Materials 📅 2026 👁 63 📚 2

Silent Spill - maritime microplastics from vessel coatings.

Paint-derived particles are increasingly recognised as a major contributor to marine microplastic pollution, yet emissions from active vessels under routine operational conditions remain poorly charac...

👤 Maes T, Lusher A L, Pazdro K, Pouch A, M... 📰 Science of The Total Environment 📅 2026 👁 33 📚 2

Particle Image Velocimetry of 3D printed vascular fluidic phantom devices

Altered hemodynamics play a key role in cerebrovascular diseases such as aneurysms and stenosis. However, in vivo imaging lacks the spatial resolution required to resolve flow dynamics in small vessel...

👤 Job van Essen | Ahmed Sharaf | Denzel Ho... 📰 arXiv 📅 2026 👁 95 📚 1
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