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Whole slide and microscopy image analysis with QuPath and OMERO

QuPath is open-source software for bioimage analysis. As a desktop application that is flexible and easy to install, QuPath is used by labs worldwide to visualise and analyse large and complex images....

👤 Léo Leplat|Alan O'Callaghan|Peter Bankhe... 📰 arXiv 📅 2026 👁 377 📚 50

SHREC: A Spectral Embedding-Based Approach for Ab-Initio Reconstruction of Helical Molecules

Cryo-electron microscopy (cryo-EM) has emerged as a powerful technique for determining the three-dimensional structures of biological molecules at near-atomic resolution. However, reconstructing helic...

👤 Guy Shapira|Yoel Shkolnisky 📰 arXiv 📅 2026 👁 360 📚 40

Single molecule localization microscopy challenge: a biologically inspired benchmark for long-sequence modeling

State space models (SSMs) have recently achieved strong performance on long sequence modeling tasks while offering improved memory and computational efficiency compared to transformer based architectu...

👤 Fatemeh Valeh|Monika Farsang|Radu Grosu|... 📰 arXiv 📅 2026 👁 475 📚 32

Physics-Informed Neural Networks for Biological $2\mathrm{D}{+}t$ Reaction-Diffusion Systems

Physics-informed neural networks (PINNs) provide a powerful framework for learning governing equations of dynamical systems from data. Biologically-informed neural networks (BINNs) are a variant of PI...

👤 William Lavery | Jodie A. Cochrane | Chr... 📰 arXiv 📅 2026 👁 51 📚 24

Leveraging Phytolith Research using Artificial Intelligence

Phytolith analysis is a crucial tool for reconstructing past vegetation and human activities, but traditional methods are severely limited by labour-intensive, time-consuming manual microscopy. To add...

👤 Andrés G. Mejía Ramón|Kate Dudgeon|Nina ... 📰 Artificial Intelligence 📅 2026 👁 350 📚 18

Countershading coloration in blue shark skin emerges from hierarchically organized and spatially tuned photonic architectures inside skin denticles

The blue shark (Prionace glauca) exhibits a striking dorsoventral color gradient, transitioning from vibrant blue dorsally to silver and white ventrally, a pattern widely interpreted as pelagic counte...

👤 Viktoriia Kamska|Emeline Raguin|Bodo D. ... 📰 arXiv 📅 2026 👁 286 📚 18

Diverse and significant microbe-mediated mineral transformation in deep-sea hydrothermal vent indicated by Methylophaga, Sulfitobacter and Roseovarius.

Microbe-mineral interactions play a crucial role in microbial energy conservation and mineral mobilization within deep-sea hydrothermal vents, yet the specific microorganisms involved remain largely u...

👤 Liu Minghua, Zhong Yingwen, Ding Yi, Ma ... 📰 Current Research in Microbial Sciences 📅 2026 👁 42 📚 10

Ascidians as a Sustainable Source of Cellulose: Physicochemical Characterization, Degradability, and Relevance for Bioplastic Applications.

Cellulose derived from ascidians (tunicates) is distinguished from plant-based counterparts by its marine origin, with high crystallinity, and complex hierarchical architecture. However, quantitative ...

👤 Zamora-Mendoza Lizbeth, Valdiviezo-Cuenc... 📰 Biopolymers 📅 2026 👁 61 📚 8

Spatio-temporal distribution patterns and risk assessment of microplastics along a coastal beach in southern Bangladesh.

This study provides a detailed, bi-seasonal analysis of microplastic (MP) distribution in Kuakata's coastal region, which is influenced by both terrestrial and marine pollution sources. The research d...

👤 Hossain Md Shawon, Karmaker Kowshik Das,... 📰 未知期刊 📅 2026 👁 30 📚 8

Bioinspired Antimicrobial Strategy: An Extremophile Deep Sea Peptide to Combat Cystic Fibrosis Infections Caused by Pseudomonas aeruginosa and Staphylococcus aureus.

Cystic fibrosis (CF)-associated lung infections caused by Pseudomonas aeruginosa (P. aeruginosa) and Staphylococcus aureus (S. aureus) remain difficult to treat due to multidrug resistance and the red...

👤 Boidin-Wichlacz Céline, Maresca Marc, Gr... 📰 Marine Drugs 📅 2026 👁 20 📚 5

Hierarchical YOLO-SAM: A Scalable Pipeline for Automated Segmentation and Morphometric Tracking of Coral Recruits in Time-Series Microscopy.

Coral reef ecosystems are declining rapidly due to climate change, disease, and anthropogenic stressors, driving the expansion of land-based coral propagation for reef restoration. A major bottleneck ...

👤 Zhao Richard S, Chen Cuixian, Van Horn M... 📰 Sensors 📅 2026 👁 66 📚 4

On Model-Based Clustering With Entropic Optimal Transport

We develop a new methodology for model-based clustering. Optimizing the log-likelihood provides a principled statistical framework for clustering, with solutions found via the EM algorithm. However, b...

👤 Gonzalo Mena 📰 arXiv 📅 2026 👁 59 📚 4

Anodic Dissolution Behavior and Electrochemical Turning of Ti80 Alloy in NaCl Solution.

Electrochemical turning is an efficient machining method for machining Ti80 pressure-resistant structures owing to its low tool cost and high machining flexibility. However, research has yet to explor...

👤 Wang Minglu, Li Zheng, Wang Jingtao, Li ... 📰 Langmuir 📅 2026 👁 34 📚 3

Effect of Hybrid Fiber on the Chloride Salt Erosion Resistance of Shotcrete.

The use of shotcrete is a critical support technique in ocean engineering structures. However, it often exhibits low chloride and salt erosion resistance under ocean environmental conditions and poor ...

👤 Hu Peng, Ji Hongyu, Liu Baicheng, Wang K... 📰 Materials 📅 2026 👁 51 📚 2

Silent Spill - maritime microplastics from vessel coatings.

Paint-derived particles are increasingly recognised as a major contributor to marine microplastic pollution, yet emissions from active vessels under routine operational conditions remain poorly charac...

👤 Maes T, Lusher A L, Pazdro K, Pouch A, M... 📰 Science of The Total Environment 📅 2026 👁 25 📚 2

Particle Image Velocimetry of 3D printed vascular fluidic phantom devices

Altered hemodynamics play a key role in cerebrovascular diseases such as aneurysms and stenosis. However, in vivo imaging lacks the spatial resolution required to resolve flow dynamics in small vessel...

👤 Job van Essen | Ahmed Sharaf | Denzel Ho... 📰 arXiv 📅 2026 👁 84 📚 1

The effect of surface properties on the interactions of particles and marine mucous filters.

Suspension feeding, in which organisms filter particles from the water for nutrition, is a widespread and ecologically critical feeding strategy in aquatic ecosystems. And yet, the principles governin...

👤 Jacobi Yuval, Epstein José A, Paz Ariell... 📰 Journal of the Royal Society Interface 📅 2026 👁 49 📚 0

The Significance of Nanomineral Particles during the Growth Process of Polymetallic Nodules in the Western Pacific Ocean.

As a huge reservoir of economic metallic elements, oceanic polymetallic nodules have important strategic significance and are one of the main research objects in marine geology, especially their forma...

👤 Huang Qiangtai, He Bo, Cai Zhourong, Hua... 📰 International Journal of Environmental Research and Public Health 📅 2026 👁 46 📚 0

Quantitative mapping of dynamic 3D transport in growing cells via volumetric spatio-temporal image correlation spectroscopy (vSTICS)

Quantitatively mapping three-dimensional (3D) flow, diffusion, and particle density in crowded living cells remains challenging because most dynamic optical microscopy measurements are effectively pla...

👤 未知 📰 arXiv 📅 - 👁 24 📚 0
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